Building Sphinx Doc

Prerequisites

This documentation uses Sphinx third-party Python package. To generate it locally from the docs/sphinx_docs/ folder, you need to install additional components.

Install Python

To install python, you can install for example the Anaconda package or the python offical package. You can also install the packages directly from Ubuntu terminal:

apt-get install python3
apt-get install python3-pip

Install Sphinx

From the prompt, it is possible to install Sphinx, as well as additional libraries required for building this documentation using pip:

pip3 install sphinx
pip3 install sphinx_rtd_theme
pip3 install sphinx-numfig
pip3 install sphinxcontrib-bibtex

Install LaTeX

If you want to build PDF, you will need LaTeX installed:

apt-get install texlive
apt-get install texlive-latex-extra
apt-get install latexmk

Building html doc

To build the documentation as a webpage (as shown on ECOGEN website), move to the docs folder and run under prompt:

make html

Building PDF doc

To build the documentation as a PDF, move to the docs folder and run under prompt:

make latexpdf

This will generate a folder docs/build/latex containing source files in LaTeX that can be used to generate a PDF.

Learning Sphinx

To learn how to develop a documentation using Sphinx, here are some usefull links: